Variant report

Variant	rs4403921
Chromosome Location	chr13:96143628-96143629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10219866	0.86[ASN][1000 genomes]
rs11617639	0.85[ASN][1000 genomes]
rs11619150	0.86[ASN][1000 genomes]
rs12866697	0.86[ASN][1000 genomes]
rs12872431	0.86[ASN][1000 genomes]
rs12876693	0.87[ASN][1000 genomes]
rs12876913	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1570903	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570904	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1890373	0.86[ASN][1000 genomes]
rs4322517	0.86[ASN][1000 genomes]
rs4335657	0.86[ASN][1000 genomes]
rs4387474	0.86[ASN][1000 genomes]
rs4402421	0.88[ASN][1000 genomes]
rs4409957	0.86[ASN][1000 genomes]
rs4466958	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547209	0.85[ASN][1000 genomes]
rs4564445	0.86[ASN][1000 genomes]
rs4564446	0.83[ASN][1000 genomes]
rs4587819	0.86[ASN][1000 genomes]
rs4609701	0.86[ASN][1000 genomes]
rs4773907	0.86[ASN][1000 genomes]
rs4773910	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4773911	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4773912	0.84[ASN][1000 genomes]
rs6492792	0.86[ASN][1000 genomes]
rs6492793	0.80[ASN][1000 genomes]
rs6492796	0.86[ASN][1000 genomes]
rs6492797	0.86[ASN][1000 genomes]
rs6492798	0.85[ASN][1000 genomes]
rs6492799	0.84[ASN][1000 genomes]
rs7322391	0.86[ASN][1000 genomes]
rs7326265	0.86[ASN][1000 genomes]
rs7326546	0.86[ASN][1000 genomes]
rs7328468	0.86[ASN][1000 genomes]
rs7332888	0.86[ASN][1000 genomes]
rs7332917	0.86[ASN][1000 genomes]
rs7338647	0.86[ASN][1000 genomes]
rs7982486	0.86[ASN][1000 genomes]
rs7982563	0.84[ASN][1000 genomes]
rs7984234	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990054	0.86[ASN][1000 genomes]
rs7992297	0.88[ASN][1000 genomes]
rs7995104	0.81[ASN][1000 genomes]
rs7995959	0.86[ASN][1000 genomes]
rs8002444	0.86[ASN][1000 genomes]
rs8002639	0.86[ASN][1000 genomes]
rs877960	0.85[ASN][1000 genomes]
rs877961	0.85[ASN][1000 genomes]
rs877962	0.82[ASN][1000 genomes]
rs9302074	0.86[ASN][1000 genomes]
rs946231	0.86[ASN][1000 genomes]
rs9516589	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516590	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9524982	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9524983	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9524984	0.85[ASN][1000 genomes]
rs9524986	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9524987	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9524988	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9561880	0.90[ASN][1000 genomes]
rs9590285	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9590286	0.82[ASN][1000 genomes]
rs9590287	0.84[ASN][1000 genomes]
rs9590288	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96143000-96144200	Weak transcription	HMEC	breast

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