Variant report
| Variant | rs4409049 |
|---|---|
| Chromosome Location | chr5:59592945-59592946 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10461451 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12054887 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs12653863 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs13166747 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs13168480 | 0.82[ASN][1000 genomes] |
| rs13171028 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1423246 | 0.90[JPT][hapmap] |
| rs149324 | 0.81[ASW][hapmap];0.82[YRI][hapmap] |
| rs27223 | 0.81[ASW][hapmap];0.82[YRI][hapmap] |
| rs34353877 | 0.82[ASN][1000 genomes] |
| rs34762247 | 0.82[ASN][1000 genomes] |
| rs35811820 | 0.82[ASN][1000 genomes] |
| rs36050835 | 0.82[ASN][1000 genomes] |
| rs4349679 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4394088 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4580739 | 0.84[JPT][hapmap] |
| rs4699955 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57237852 | 0.82[ASN][1000 genomes] |
| rs6449466 | 0.82[ASN][1000 genomes] |
| rs6449467 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6449468 | 0.82[ASN][1000 genomes] |
| rs6897671 | 0.86[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7714394 | 0.87[CHB][hapmap];0.95[JPT][hapmap] |
| rs7735149 | 0.80[ASN][1000 genomes] |
| rs7737905 | 0.84[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025856 | chr5:59188419-59928852 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv830316 | chr5:59480269-59689829 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4409049 | AK095534 | trans | multi-tissue | Pritchard |
Chromatin state (count:0 , 50 per page) page:
| No data |
