Variant report

Variant	rs4410457
Chromosome Location	chr3:85130418-85130419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10433523	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127873	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127876	0.82[EUR][1000 genomes]
rs11127877	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127880	0.83[ASN][1000 genomes]
rs13059287	0.83[ASN][1000 genomes]
rs13072305	0.85[EUR][1000 genomes]
rs13078494	0.81[EUR][1000 genomes]
rs13097560	0.82[EUR][1000 genomes]
rs13101042	0.83[EUR][1000 genomes]
rs1994315	0.81[EUR][1000 genomes]
rs2062431	0.86[EUR][1000 genomes]
rs2087011	0.83[EUR][1000 genomes]
rs2171140	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2171141	0.85[ASN][1000 genomes]
rs2200461	0.86[EUR][1000 genomes]
rs2200464	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220243	0.85[EUR][1000 genomes]
rs2326126	0.86[EUR][1000 genomes]
rs2326128	0.85[EUR][1000 genomes]
rs34201102	0.81[EUR][1000 genomes]
rs4856559	0.82[EUR][1000 genomes]
rs4856560	0.86[EUR][1000 genomes]
rs62250629	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6549009	0.81[EUR][1000 genomes]
rs6549011	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6549012	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66500121	0.81[EUR][1000 genomes]
rs6765011	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768559	0.86[EUR][1000 genomes]
rs6775464	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6775752	0.82[EUR][1000 genomes]
rs6788656	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6790864	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791035	0.82[EUR][1000 genomes]
rs6796256	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6796393	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6798922	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6801271	0.83[EUR][1000 genomes]
rs7632628	0.85[ASN][1000 genomes]
rs7632909	0.85[ASN][1000 genomes]
rs7636138	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645049	0.85[ASN][1000 genomes]
rs7645952	0.86[EUR][1000 genomes]
rs7646739	0.83[ASN][1000 genomes]
rs7647649	0.82[EUR][1000 genomes]
rs9284802	0.81[EUR][1000 genomes]
rs9309969	0.82[EUR][1000 genomes]
rs9309970	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9814390	0.86[EUR][1000 genomes]
rs9814835	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9820587	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9839194	0.82[EUR][1000 genomes]
rs9855054	0.86[EUR][1000 genomes]
rs9869902	0.86[EUR][1000 genomes]
rs9883252	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85122400-85130800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:85125000-85130600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:85125400-85130600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:85125600-85130600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:85128000-85130600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:85130000-85132000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:85130200-85131400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:85130400-85130600	Flanking Active TSS	A549	lung
9	chr3:85130400-85131000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:85130400-85131000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:85130400-85131000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:85130400-85131000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr3:85130400-85131200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:85130400-85131600	Enhancers	Brain Anterior Caudate	brain
15	chr3:85130400-85132000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:85130400-85132000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:85130400-85132000	Enhancers	Brain Angular Gyrus	brain
18	chr3:85130400-85132200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:85130400-85132200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:85130400-85133800	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links