Variant report
| Variant | rs442470 |
|---|---|
| Chromosome Location | chr5:111842958-111842959 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10072877 | 0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs163454 | 0.84[EUR][1000 genomes] |
| rs163455 | 0.84[EUR][1000 genomes] |
| rs168182 | 0.87[AFR][1000 genomes] |
| rs255704 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs255705 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs255707 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs338841 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs338848 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs338851 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs338852 | 0.90[ASN][1000 genomes] |
| rs338853 | 0.90[ASN][1000 genomes] |
| rs341309 | 0.87[AFR][1000 genomes] |
| rs341310 | 0.87[AFR][1000 genomes] |
| rs341311 | 0.87[AFR][1000 genomes] |
| rs341317 | 0.87[AFR][1000 genomes] |
| rs341318 | 0.87[AFR][1000 genomes] |
| rs341320 | 0.87[AFR][1000 genomes] |
| rs341321 | 0.87[AFR][1000 genomes] |
| rs341323 | 0.87[AFR][1000 genomes] |
| rs413345 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs456145 | 0.84[AFR][1000 genomes] |
| rs456305 | 0.87[AFR][1000 genomes] |
| rs458204 | 0.87[AFR][1000 genomes] |
| rs459290 | 0.87[AFR][1000 genomes] |
| rs459306 | 0.85[AFR][1000 genomes] |
| rs459369 | 0.86[AFR][1000 genomes] |
| rs463588 | 0.87[AFR][1000 genomes] |
| rs464453 | 0.87[AFR][1000 genomes] |
| rs465021 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv882715 | chr5:111836278-111894491 | Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:111842800-111843200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
