Variant report

Variant	rs4427001
Chromosome Location	chr6:56137791-56137792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12195053	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12209054	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209474	0.89[ASN][1000 genomes]
rs12213867	0.89[ASN][1000 genomes]
rs3846930	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3996938	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4361616	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4521578	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4715600	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715605	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57818602	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911260	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724677	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870218	0.85[EUR][1000 genomes]
rs7746772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296836	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382607	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464373	0.89[ASN][1000 genomes]
rs9464374	0.89[ASN][1000 genomes]
rs9475653	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475656	0.89[ASN][1000 genomes]
rs9475657	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56133400-56139000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:56137000-56143000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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