Variant report

Variant	rs4430089
Chromosome Location	chr8:63372633-63372634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11990668	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12541660	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12543410	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12550685	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13254759	0.82[AFR][1000 genomes]
rs1451843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16928787	0.81[EUR][1000 genomes]
rs16928865	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16928899	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1869015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2351661	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4144761	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738977	0.81[AFR][1000 genomes]
rs4738978	0.81[AFR][1000 genomes]
rs59799730	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6988778	0.89[EUR][1000 genomes]
rs6995358	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7004955	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63368200-63374600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63370600-63373400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:63370600-63374200	Enhancers	Fetal Intestine Large	intestine
4	chr8:63371200-63374000	Enhancers	Fetal Intestine Small	intestine
5	chr8:63371600-63372800	Enhancers	Brain Germinal Matrix	brain
6	chr8:63372000-63373200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:63372000-63373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:63372000-63374800	Weak transcription	Brain Anterior Caudate	brain
9	chr8:63372000-63375000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:63372200-63373200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:63372400-63373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:63372400-63373400	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links