Variant report

Variant	rs4432976
Chromosome Location	chr6:13066297-13066298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10807388	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12216401	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1579135	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1937771	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132046	0.94[ASN][1000 genomes]
rs4292514	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349811	0.82[CHD][hapmap];0.81[GIH][hapmap]
rs4357136	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4367379	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4492189	0.95[ASN][1000 genomes]
rs4580867	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624870	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715043	0.82[CHD][hapmap]
rs5002331	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901563	0.82[CHD][hapmap]
rs6907651	0.80[CHD][hapmap]
rs6912487	0.81[CHD][hapmap]
rs6920793	0.81[AFR][1000 genomes]
rs6924689	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes]
rs7341250	0.82[CHD][hapmap]
rs7738606	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743585	0.87[JPT][hapmap]
rs7748124	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750023	0.87[JPT][hapmap]
rs7750099	0.87[JPT][hapmap]
rs7775103	0.87[JPT][hapmap]
rs9349456	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9369759	0.94[ASN][1000 genomes]
rs9369760	0.91[ASN][1000 genomes]
rs9369762	0.81[CHD][hapmap]
rs9369768	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369779	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9369815	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9381636	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs9395335	0.95[ASN][1000 genomes]
rs9463363	0.82[CHD][hapmap]
rs9463364	0.82[CHD][hapmap];0.81[GIH][hapmap]
rs9473285	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs9473437	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9473486	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13039400-13071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:13052400-13066600	Weak transcription	Right Ventricle	heart
3	chr6:13054400-13071800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:13054800-13074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:13055200-13073000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:13055200-13076400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:13056200-13068400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:13056200-13068800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:13057000-13067000	Weak transcription	Pancreas	Pancrea
10	chr6:13059200-13077600	Weak transcription	Lung	lung
11	chr6:13061400-13066400	Weak transcription	Aorta	Aorta
12	chr6:13061400-13066600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:13063600-13069200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:13064200-13068000	Weak transcription	Fetal Heart	heart
15	chr6:13065200-13067200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:13065200-13067400	Enhancers	NHDF-Ad	bronchial
17	chr6:13065600-13066800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:13065800-13066800	Weak transcription	Left Ventricle	heart
19	chr6:13065800-13067000	Weak transcription	Right Atrium	heart
20	chr6:13065800-13068000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:13066200-13071800	Weak transcription	Brain Cingulate Gyrus	brain

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