The 2.0 version of rSNPBase
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Variant report
Variant
rs4433540
Chromosome Location
chr11:33831169-33831170
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CTCF
chr11:33831020-33831170
GM12871
blood:
n/a
n/a
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:33830627..33831381-chr11:33851203..33851776,2
MCF-7
breast:
2
chr11:33830934..33831625-chr11:33850765..33851369,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000254619
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:3)
rs_ID
r
2
[population]
rs10836112
1.00[EUR][1000 genomes]
rs12280748
1.00[EUR][1000 genomes]
rs61748291
1.00[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links