Variant report

Variant	rs4434407
Chromosome Location	chr5:97795220-97795221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035465	0.80[EUR][1000 genomes]
rs10043034	0.80[EUR][1000 genomes]
rs10056188	0.81[EUR][1000 genomes]
rs10063500	0.81[EUR][1000 genomes]
rs1037597	0.80[EUR][1000 genomes]
rs10463714	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10463716	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10463717	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10463718	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1072722	0.80[EUR][1000 genomes]
rs10900730	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241494	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241524	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11950768	0.80[EUR][1000 genomes]
rs11954735	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11957390	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12519449	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655510	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1563317	0.80[EUR][1000 genomes]
rs17165974	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1840493	0.80[EUR][1000 genomes]
rs1840494	0.80[EUR][1000 genomes]
rs1840495	0.80[EUR][1000 genomes]
rs3890433	0.80[EUR][1000 genomes]
rs56410174	0.80[EUR][1000 genomes]
rs59060802	0.80[EUR][1000 genomes]
rs61048056	0.80[EUR][1000 genomes]
rs6595251	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6861347	0.80[EUR][1000 genomes]
rs6865661	0.81[EUR][1000 genomes]
rs6870628	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs723206	0.81[EUR][1000 genomes]
rs723207	0.81[EUR][1000 genomes]
rs73143889	0.80[EUR][1000 genomes]
rs7717448	0.81[EUR][1000 genomes]
rs7717913	0.80[EUR][1000 genomes]
rs9686816	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882409	chr5:97761687-97817930	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv882410	chr5:97764522-97810693	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
6	nsv882411	chr5:97764867-97817930	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97785600-97795400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97790600-97799200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:97791400-97795800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:97791600-97797600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:97791600-97797800	Enhancers	NHDF-Ad	bronchial
6	chr5:97791800-97799000	Weak transcription	HMEC	breast
7	chr5:97792000-97795800	Weak transcription	HSMMtube	muscle
8	chr5:97793800-97795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:97794200-97795600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:97794200-97795800	Weak transcription	HSMM	muscle
11	chr5:97794800-97795800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:97794800-97796000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:97794800-97800400	Weak transcription	NHLF	lung
14	chr5:97795000-97804200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:97795200-97795600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links