Variant report

Variant	rs443963
Chromosome Location	chr7:101811312-101811313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101806322..101808556-chr7:101810641..101812988,3	MCF-7	breast:
2	chr7:101804671..101808836-chr7:101810713..101814801,4	K562	blood:

Variant related genes	Relation type
ENSG00000258040	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs169307	0.85[AMR][1000 genomes]
rs201469	0.82[AMR][1000 genomes]
rs201470	0.82[AMR][1000 genomes]
rs201471	0.82[AMR][1000 genomes]
rs201475	0.86[AMR][1000 genomes]
rs201477	0.86[AMR][1000 genomes]
rs201478	0.86[AMR][1000 genomes]
rs201480	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs201481	0.86[AMR][1000 genomes]
rs201482	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs201489	0.80[EUR][1000 genomes]
rs201490	0.81[EUR][1000 genomes]
rs201492	0.81[EUR][1000 genomes]
rs201493	0.80[EUR][1000 genomes]
rs201497	0.82[EUR][1000 genomes]
rs201498	0.82[EUR][1000 genomes]
rs201500	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201502	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201503	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201504	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201505	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201507	0.83[EUR][1000 genomes]
rs201508	0.83[EUR][1000 genomes]
rs201509	0.83[EUR][1000 genomes]
rs201511	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs201522	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201526	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201527	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs201529	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs367333	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs380175	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs382228	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs411354	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs417013	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs427534	0.80[EUR][1000 genomes]
rs436287	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs436709	0.85[EUR][1000 genomes]
rs448591	0.84[EUR][1000 genomes]
rs4729776	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6465851	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6950791	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6970800	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101790800-101811800	Weak transcription	Osteobl	bone
9	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
14	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
16	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
17	chr7:101797200-101812800	Weak transcription	HSMM	muscle
18	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
19	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
24	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:101797800-101852200	Weak transcription	NHEK	skin
26	chr7:101798200-101812800	Weak transcription	Brain Anterior Caudate	brain
27	chr7:101798600-101812600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:101799800-101812600	Weak transcription	Fetal Kidney	kidney
29	chr7:101799800-101815000	Weak transcription	K562	blood
30	chr7:101800000-101811600	Strong transcription	Fetal Stomach	stomach
31	chr7:101800000-101812800	Weak transcription	NHDF-Ad	bronchial
32	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr7:101800600-101812800	Weak transcription	Fetal Brain Male	brain
34	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
35	chr7:101801200-101819800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:101802000-101812000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:101802200-101812800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:101802200-101812800	Weak transcription	Ovary	ovary
40	chr7:101802200-101813000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:101802800-101812600	Weak transcription	NH-A	brain
42	chr7:101802800-101813600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr7:101804000-101814000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr7:101807200-101811400	Weak transcription	Liver	Liver
46	chr7:101807200-101812000	Weak transcription	Adipose Nuclei	Adipose
47	chr7:101807200-101812800	Weak transcription	HepG2	liver
48	chr7:101807200-101813600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:101807200-101814000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:101807400-101813600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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