Variant report

Variant	rs4440359
Chromosome Location	chr5:15633981-15633982
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10520820	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11748066	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13165753	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13165774	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13176043	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13177182	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13177283	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13184983	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13190262	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17523444	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17523486	0.88[AMR][1000 genomes]
rs17523562	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2059900	0.89[EUR][1000 genomes]
rs35283404	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35336928	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35839071	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4129028	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4509017	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58149311	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60776566	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6554891	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6860057	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6864426	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6865410	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6871889	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6872217	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6878966	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6896719	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71595943	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7706195	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv4732	chr5:15598325-15636520	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15600600-15645400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:15610400-15635200	Weak transcription	Fetal Stomach	stomach
3	chr5:15613600-15635200	Weak transcription	Right Ventricle	heart
4	chr5:15620800-15635000	Weak transcription	Lung	lung
5	chr5:15620800-15635400	Weak transcription	Psoas Muscle	Psoas
6	chr5:15621400-15635400	Weak transcription	Aorta	Aorta
7	chr5:15627600-15635400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:15627600-15648000	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:15627800-15635000	Weak transcription	Brain Angular Gyrus	brain
10	chr5:15627800-15635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:15627800-15637000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:15628800-15635200	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:15629800-15635200	Weak transcription	Left Ventricle	heart
14	chr5:15629800-15635200	Weak transcription	Ovary	ovary
15	chr5:15630200-15635200	Weak transcription	NHDF-Ad	bronchial
16	chr5:15630600-15634600	Weak transcription	HSMM	muscle
17	chr5:15630600-15634600	Weak transcription	HSMMtube	muscle
18	chr5:15630600-15635200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:15630600-15635200	Weak transcription	Osteobl	bone
20	chr5:15630800-15634800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:15630800-15634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:15631000-15634800	Weak transcription	Fetal Heart	heart
23	chr5:15631000-15635400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:15631400-15635200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:15631400-15645200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:15633600-15644600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:15633800-15637000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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