Variant report

Variant	rs4442033
Chromosome Location	chr7:39268819-39268820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10242061	0.89[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs10246046	0.88[ASN][1000 genomes]
rs10263259	0.82[CHB][hapmap];1.00[CHD][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs10265739	1.00[ASW][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10272803	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs10275706	0.88[ASN][1000 genomes]
rs11505524	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs11768425	0.82[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs11771925	0.89[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs12667875	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs12667891	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs12672115	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs28599716	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35136533	0.87[ASN][1000 genomes]
rs35439815	0.86[ASN][1000 genomes]
rs4236356	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4291171	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323393	0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4478468	0.82[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs4723832	0.96[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58647599	0.81[ASN][1000 genomes]
rs6958617	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7789406	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs7789925	0.92[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9655034	0.89[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39268000-39269000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr7:39268000-39269000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:39268000-39269200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:39268000-39269400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:39268000-39269400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:39268000-39269400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:39268000-39269400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:39268000-39269600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:39268200-39269000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:39268200-39269400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:39268400-39269400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:39268400-39269400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:39268400-39269600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:39268600-39269400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:39268800-39269200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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