Variant report

Variant	rs4449992
Chromosome Location	chr1:215894886-215894887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10864193	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs11120614	0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11120616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs12021518	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12058230	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12123457	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap]
rs12141500	0.88[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs1418693	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs1418696	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17025255	0.86[CHB][hapmap]
rs2797239	0.88[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]
rs2797245	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]
rs2797246	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2820682	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2820695	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap]
rs4638090	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6656265	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6656366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6674308	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6694510	0.88[CEU][hapmap];0.89[TSI][hapmap]
rs9662073	0.88[CEU][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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