Variant report

Variant	rs4452633
Chromosome Location	chr6:55992706-55992707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs1011277	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1028390	1.00[JPT][hapmap]
rs10484704	1.00[JPT][hapmap]
rs10484724	1.00[JPT][hapmap]
rs10807507	1.00[JPT][hapmap]
rs10807508	1.00[JPT][hapmap]
rs10807510	1.00[JPT][hapmap]
rs10948974	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10948975	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11970688	0.81[EUR][1000 genomes]
rs12189567	1.00[JPT][hapmap]
rs12189571	1.00[JPT][hapmap]
rs12190695	1.00[JPT][hapmap]
rs12190930	1.00[JPT][hapmap]
rs12191931	1.00[JPT][hapmap]
rs12192012	1.00[JPT][hapmap]
rs12194051	1.00[JPT][hapmap]
rs12194192	1.00[JPT][hapmap]
rs12194397	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12194916	1.00[JPT][hapmap]
rs12194997	1.00[JPT][hapmap]
rs12195340	1.00[JPT][hapmap]
rs12196213	1.00[JPT][hapmap]
rs12196526	1.00[JPT][hapmap]
rs12196649	1.00[JPT][hapmap]
rs12196670	1.00[JPT][hapmap]
rs12196709	1.00[JPT][hapmap]
rs12196860	1.00[JPT][hapmap]
rs12197951	1.00[JPT][hapmap]
rs12198041	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12201286	1.00[JPT][hapmap]
rs12201413	1.00[JPT][hapmap]
rs12201531	1.00[JPT][hapmap]
rs12203179	0.89[JPT][hapmap]
rs12203653	1.00[JPT][hapmap]
rs12203768	1.00[JPT][hapmap]
rs12205230	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12205653	1.00[JPT][hapmap]
rs12206920	1.00[JPT][hapmap]
rs12207120	1.00[JPT][hapmap]
rs12207662	1.00[JPT][hapmap]
rs12207665	1.00[JPT][hapmap]
rs12207715	1.00[JPT][hapmap]
rs12207719	1.00[JPT][hapmap]
rs12208500	1.00[JPT][hapmap]
rs12208615	1.00[JPT][hapmap]
rs12208823	1.00[JPT][hapmap]
rs12208954	1.00[JPT][hapmap]
rs12209003	1.00[JPT][hapmap]
rs12209420	1.00[JPT][hapmap]
rs12209529	1.00[JPT][hapmap]
rs12210228	1.00[JPT][hapmap]
rs12210402	1.00[JPT][hapmap]
rs12211223	1.00[JPT][hapmap]
rs12212135	1.00[JPT][hapmap]
rs12212143	1.00[JPT][hapmap]
rs12212211	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12212998	1.00[JPT][hapmap]
rs12213291	1.00[JPT][hapmap]
rs12213571	1.00[JPT][hapmap]
rs12214594	1.00[JPT][hapmap]
rs12214662	1.00[JPT][hapmap]
rs12215027	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12215913	1.00[JPT][hapmap]
rs12216538	1.00[JPT][hapmap]
rs1555095	1.00[JPT][hapmap]
rs1555096	1.00[JPT][hapmap]
rs16887615	0.82[JPT][hapmap]
rs17218267	1.00[JPT][hapmap]
rs17218309	1.00[JPT][hapmap]
rs17218770	1.00[JPT][hapmap]
rs17219028	1.00[JPT][hapmap]
rs17219063	1.00[JPT][hapmap]
rs17219126	1.00[JPT][hapmap]
rs17219382	1.00[JPT][hapmap]
rs17221026	0.82[JPT][hapmap]
rs17683841	1.00[JPT][hapmap]
rs17683846	1.00[JPT][hapmap]
rs17683955	1.00[JPT][hapmap]
rs17751067	1.00[JPT][hapmap]
rs17751085	1.00[JPT][hapmap]
rs17751114	1.00[JPT][hapmap]
rs17751143	1.00[JPT][hapmap]
rs17817455	1.00[JPT][hapmap]
rs17817730	1.00[JPT][hapmap]
rs17818151	1.00[JPT][hapmap]
rs17818561	1.00[JPT][hapmap]
rs17818687	1.00[JPT][hapmap]
rs17819585	0.89[JPT][hapmap]
rs17819753	0.90[JPT][hapmap]
rs17819824	0.90[JPT][hapmap]
rs1925165	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925166	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1925170	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1925174	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1925175	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1925178	0.89[JPT][hapmap]
rs1998699	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1998700	0.84[EUR][1000 genomes]
rs2076473	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076474	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2076475	1.00[JPT][hapmap]
rs2143359	1.00[JPT][hapmap]
rs2397203	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3846919	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3950155	1.00[JPT][hapmap]
rs41464152	1.00[JPT][hapmap]
rs4295483	1.00[JPT][hapmap]
rs4295484	1.00[JPT][hapmap]
rs4336432	1.00[JPT][hapmap]
rs4374814	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4388288	1.00[JPT][hapmap]
rs4469280	1.00[JPT][hapmap]
rs4482975	1.00[JPT][hapmap]
rs4544908	1.00[JPT][hapmap]
rs4715576	0.88[ASN][1000 genomes]
rs4715577	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4715578	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715580	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4715583	0.81[EUR][1000 genomes]
rs4715584	0.81[EUR][1000 genomes]
rs6920461	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6926301	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6927562	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6930358	0.83[ASN][1000 genomes]
rs7450492	1.00[JPT][hapmap]
rs761104	0.85[EUR][1000 genomes]
rs761105	0.85[EUR][1000 genomes]
rs763966	0.82[JPT][hapmap]
rs764517	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs926534	0.85[EUR][1000 genomes]
rs926535	0.85[EUR][1000 genomes]
rs9296831	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357893	0.84[EUR][1000 genomes]
rs9367676	0.86[EUR][1000 genomes]
rs9370479	0.88[ASN][1000 genomes]
rs9382584	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9475564	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9475565	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475583	0.83[EUR][1000 genomes]
rs9475586	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55967800-56008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:55979200-55998400	Weak transcription	Aorta	Aorta
4	chr6:55979200-55998400	Weak transcription	Fetal Stomach	stomach
5	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
6	chr6:55990400-56000800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:55992400-55993400	Strong transcription	Fetal Muscle Leg	muscle
8	chr6:55992600-55993600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:55992600-55994400	Strong transcription	Fetal Lung	lung

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