Variant report

Variant	rs445345
Chromosome Location	chr7:101589696-101589697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:101588702..101590928-chr7:101591262..101593681,2	MCF-7	breast:
2	chr7:101455300..101463809-chr7:101582792..101593292,40	MCF-7	breast:
3	chr7:101524538..101530208-chr7:101583819..101590225,13	MCF-7	breast:
4	chr7:101588762..101590915-chr7:101595277..101597908,2	K562	blood:
5	chr7:101582848..101590446-chr7:101646237..101653992,20	MCF-7	breast:
6	chr7:101574397..101581279-chr7:101584061..101589887,8	K562	blood:
7	chr7:101464106..101466610-chr7:101588018..101589730,3	MCF-7	breast:
8	chr7:101583272..101586097-chr7:101589522..101591483,2	K562	blood:
9	chr7:101583175..101586097-chr7:101587882..101593351,5	K562	blood:
10	chr7:101582741..101590045-chr7:101612112..101621417,29	MCF-7	breast:
11	chr7:101583996..101590317-chr7:101598825..101610404,14	MCF-7	breast:
12	chr7:101583393..101585802-chr7:101586668..101590490,4	MCF-7	breast:
13	chr7:101589210..101591532-chr7:101593238..101595118,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272219	Chromatin interaction
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs112513	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906656	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs407366	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs455130	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4727512	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73185829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101567000-101596000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:101570200-101597000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:101577600-101595600	Weak transcription	Primary T cells from cord blood	blood
4	chr7:101578200-101612000	Weak transcription	HepG2	liver
5	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:101580600-101590600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:101580600-101590800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:101580600-101591200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:101583400-101608000	Weak transcription	Primary B cells from cord blood	blood
10	chr7:101583600-101591000	Enhancers	Fetal Heart	heart
11	chr7:101584400-101590600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:101584400-101596200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr7:101584800-101590800	Weak transcription	Fetal Brain Female	brain
14	chr7:101585000-101590000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:101585200-101590800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:101585400-101590800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:101585600-101590000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:101585600-101590600	Weak transcription	Fetal Lung	lung
19	chr7:101585600-101591000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:101585600-101591000	Weak transcription	Brain Anterior Caudate	brain
21	chr7:101585600-101594400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:101585800-101590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:101585800-101591000	Weak transcription	Fetal Kidney	kidney
24	chr7:101585800-101591000	Weak transcription	HUVEC	blood vessel
25	chr7:101585800-101592400	Enhancers	Left Ventricle	heart
26	chr7:101586000-101589800	Enhancers	Right Ventricle	heart
27	chr7:101586000-101591000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:101586000-101591200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:101586000-101603200	Weak transcription	Fetal Intestine Large	intestine
30	chr7:101586200-101590000	Weak transcription	Ovary	ovary
31	chr7:101586200-101590800	Weak transcription	Brain Angular Gyrus	brain
32	chr7:101586200-101591000	Weak transcription	NH-A	brain
33	chr7:101586200-101591200	Weak transcription	Aorta	Aorta
34	chr7:101586200-101591200	Weak transcription	Small Intestine	intestine
35	chr7:101586200-101591200	Weak transcription	HSMMtube	muscle
36	chr7:101586200-101594000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:101586200-101595800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:101586200-101595800	Weak transcription	GM12878-XiMat	blood
39	chr7:101586400-101590000	Weak transcription	K562	blood
40	chr7:101586400-101590400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:101586400-101590800	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:101586400-101590800	Weak transcription	NHLF	lung
43	chr7:101586400-101591000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr7:101586400-101591000	Weak transcription	HSMM	muscle
45	chr7:101586400-101591200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:101586400-101591200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:101586400-101593200	Weak transcription	Hela-S3	cervix
48	chr7:101586400-101595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:101586400-101595800	Weak transcription	Colonic Mucosa	Colon
50	chr7:101586400-101595800	Weak transcription	NHDF-Ad	bronchial

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