Variant report

Variant	rs4455406
Chromosome Location	chr4:86668952-86668953
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:86666068..86669056-chr4:86671482..86673807,2	K562	blood:
2	chr4:86068869..86069585-chr4:86668543..86669322,2	MCF-7	breast:
3	chr4:86068522..86069297-chr4:86668912..86669717,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1031987	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11722392	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11731040	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12644984	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646641	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12647014	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12648692	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12650494	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13112493	0.97[ASN][1000 genomes]
rs13123125	0.85[AMR][1000 genomes]
rs1482091	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1482092	0.97[ASN][1000 genomes]
rs1482095	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17010599	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17010697	0.91[ASN][1000 genomes]
rs17010839	0.86[AMR][1000 genomes]
rs1811576	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2624023	0.97[ASN][1000 genomes]
rs343848	0.98[ASN][1000 genomes]
rs343852	0.99[ASN][1000 genomes]
rs41477846	0.92[ASN][1000 genomes]
rs56989679	0.94[ASN][1000 genomes]
rs57065351	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6531862	0.93[ASN][1000 genomes]
rs6531863	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6839040	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6853196	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855390	0.96[ASN][1000 genomes]
rs72656252	0.93[ASN][1000 genomes]
rs72656285	0.97[ASN][1000 genomes]
rs7661884	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7675688	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7682971	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685320	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7697134	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv526211	chr4:86666893-86677107	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86659800-86671600	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:86662200-86669200	Weak transcription	NH-A	brain
3	chr4:86663400-86669200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86663400-86673200	Weak transcription	Left Ventricle	heart
5	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:86663800-86669200	Weak transcription	Fetal Heart	heart
7	chr4:86664000-86675600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:86664400-86673000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:86665000-86670200	Weak transcription	GM12878-XiMat	blood
10	chr4:86665000-86672800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:86665000-86674600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:86665200-86669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:86665400-86669400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:86665600-86675600	Weak transcription	Adipose Nuclei	Adipose
15	chr4:86665800-86673200	Weak transcription	Right Ventricle	heart
16	chr4:86666000-86682400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:86666200-86669200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:86666200-86669800	Weak transcription	NHDF-Ad	bronchial
19	chr4:86666200-86670000	Weak transcription	HSMMtube	muscle
20	chr4:86666400-86669000	Weak transcription	Osteobl	bone
21	chr4:86666400-86669400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:86667000-86669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:86667200-86669200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:86667400-86669800	Weak transcription	HSMM	muscle
25	chr4:86667600-86669200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:86667600-86678000	Weak transcription	Stomach Mucosa	stomach
27	chr4:86667800-86669400	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:86667800-86676400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr4:86667800-86676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:86668000-86669600	Enhancers	Primary B cells from cord blood	blood
31	chr4:86668000-86677800	Weak transcription	Right Atrium	heart
32	chr4:86668800-86669600	Enhancers	A549	lung

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