Variant report

Variant	rs4460889
Chromosome Location	chr12:87762196-87762197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10735256	1.00[ASN][1000 genomes]
rs10735257	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735258	1.00[ASN][1000 genomes]
rs10745442	1.00[ASN][1000 genomes]
rs10777032	1.00[ASN][1000 genomes]
rs10777033	1.00[ASN][1000 genomes]
rs10777034	1.00[ASN][1000 genomes]
rs10777035	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10777040	1.00[ASN][1000 genomes]
rs10777042	1.00[ASN][1000 genomes]
rs10858584	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10858592	1.00[ASN][1000 genomes]
rs11104443	1.00[ASN][1000 genomes]
rs2406753	1.00[ASN][1000 genomes]
rs2406754	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2897518	1.00[ASN][1000 genomes]
rs4147490	1.00[ASN][1000 genomes]
rs4240740	1.00[ASN][1000 genomes]
rs4254148	1.00[ASN][1000 genomes]
rs4269999	1.00[ASN][1000 genomes]
rs4284481	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4300469	1.00[ASN][1000 genomes]
rs4300470	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4326883	1.00[ASN][1000 genomes]
rs4338623	1.00[ASN][1000 genomes]
rs4402386	1.00[ASN][1000 genomes]
rs4456347	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466916	1.00[ASN][1000 genomes]
rs4502057	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4561282	1.00[ASN][1000 genomes]
rs4564410	1.00[ASN][1000 genomes]
rs4597138	1.00[ASN][1000 genomes]
rs4625561	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4842455	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4842556	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4842559	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4842570	1.00[ASN][1000 genomes]
rs5005936	1.00[ASN][1000 genomes]
rs6538078	1.00[ASN][1000 genomes]
rs6538079	1.00[ASN][1000 genomes]
rs6538082	1.00[ASN][1000 genomes]
rs6538083	1.00[ASN][1000 genomes]
rs6538086	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6538087	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6538088	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7305305	1.00[ASN][1000 genomes]
rs7310810	1.00[ASN][1000 genomes]
rs7962840	1.00[ASN][1000 genomes]
rs7970683	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970729	1.00[ASN][1000 genomes]
rs7970832	1.00[ASN][1000 genomes]
rs7970866	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971055	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971424	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974679	1.00[ASN][1000 genomes]
rs7980176	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87752400-87772200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:87760000-87763000	Enhancers	Fetal Intestine Large	intestine
3	chr12:87761800-87762400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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