Variant report

Variant	rs4461040
Chromosome Location	chr15:79143325-79143326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79135320..79138414-chr15:79142742..79145472,3	K562	blood:
2	chr15:79101303..79103823-chr15:79141014..79143938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction
ENSG00000136378	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1904921	1.00[AMR][1000 genomes]
rs28660353	1.00[AMR][1000 genomes]
rs4132787	1.00[AMR][1000 genomes]
rs4778764	1.00[AMR][1000 genomes]
rs59025733	1.00[AMR][1000 genomes]
rs6495357	1.00[AMR][1000 genomes]
rs6495359	1.00[AMR][1000 genomes]
rs7170672	1.00[AMR][1000 genomes]
rs8030180	1.00[AMR][1000 genomes]
rs8038374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038643	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79134000-79147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:79142600-79143400	Enhancers	Brain Cingulate Gyrus	brain
3	chr15:79142600-79143800	Enhancers	Fetal Lung	lung
4	chr15:79142800-79143400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:79142800-79143800	Enhancers	Brain Anterior Caudate	brain
6	chr15:79142800-79143800	Enhancers	Placenta	Placenta
7	chr15:79142800-79144000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr15:79142800-79144000	Enhancers	Brain Angular Gyrus	brain
9	chr15:79142800-79144000	Enhancers	Fetal Stomach	stomach
10	chr15:79143000-79143400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:79143000-79143400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:79143000-79143800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:79143000-79143800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:79143000-79143800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:79143000-79143800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:79143000-79143800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:79143000-79143800	Enhancers	Pancreas	Pancrea
18	chr15:79143000-79144000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:79143000-79144000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:79143000-79144000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr15:79143000-79144400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:79143000-79144600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:79143200-79143400	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr15:79143200-79143600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr15:79143200-79143600	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr15:79143200-79143800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr15:79143200-79143800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr15:79143200-79143800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:79143200-79143800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:79143200-79143800	Flanking Active TSS	HepG2	liver
31	chr15:79143200-79144000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:79143200-79144000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr15:79143200-79144000	Enhancers	HUES64 Cell Line	embryonic stem cell

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