Variant report

Variant	rs4463007
Chromosome Location	chr3:46472242-46472243
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10490771	0.87[AMR][1000 genomes]
rs11574432	0.87[AMR][1000 genomes]
rs11574438	0.87[AMR][1000 genomes]
rs11574444	0.87[AMR][1000 genomes]
rs11575823	0.87[AMR][1000 genomes]
rs17141109	0.87[AMR][1000 genomes]
rs17141112	0.87[AMR][1000 genomes]
rs36020695	0.86[AFR][1000 genomes]
rs3918378	0.87[AMR][1000 genomes]
rs3918383	0.87[AMR][1000 genomes]
rs3918386	0.87[AMR][1000 genomes]
rs41469351	0.87[AMR][1000 genomes]
rs41475349	0.87[AMR][1000 genomes]
rs41499550	0.87[AMR][1000 genomes]
rs58889017	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:46460200-46477000	Weak transcription	Pancreas	Pancrea
4	chr3:46461800-46477000	Weak transcription	Gastric	stomach
5	chr3:46465200-46488800	Weak transcription	Left Ventricle	heart
6	chr3:46465200-46488800	Weak transcription	Right Ventricle	heart
7	chr3:46467200-46474600	Weak transcription	Spleen	Spleen
8	chr3:46469000-46474400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:46469800-46477200	Weak transcription	Adipose Nuclei	Adipose
10	chr3:46471000-46472800	Weak transcription	Placenta	Placenta
11	chr3:46471400-46472600	Weak transcription	Dnd41	blood
12	chr3:46472000-46474800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:46472200-46474400	Weak transcription	HMEC	breast
14	chr3:46472200-46474600	Weak transcription	NHEK	skin
15	chr3:46472200-46475000	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links