Variant report

Variant	rs4463903
Chromosome Location	chr12:87195185-87195186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:87190903..87192895-chr12:87193374..87195934,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10431417	0.84[CEU][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap]
rs10492297	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10777001	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10777005	0.80[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10858456	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10858475	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10858479	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10858481	0.89[GIH][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs10858482	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10858483	0.86[EUR][1000 genomes]
rs10858484	0.87[CHB][hapmap]
rs10858485	0.86[CHB][hapmap]
rs10858494	0.87[CHB][hapmap];0.80[CHD][hapmap]
rs10858496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10858497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10858498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858500	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11104084	0.87[EUR][1000 genomes]
rs11104117	0.87[CHB][hapmap];0.80[CHD][hapmap]
rs11104119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11104120	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1156235	0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap]
rs2035718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2035719	0.91[ASN][1000 genomes]
rs2130177	0.86[CHB][hapmap]
rs2406444	0.87[CHB][hapmap]
rs2897357	0.92[CEU][hapmap]
rs3924288	0.87[CHB][hapmap]
rs4240768	0.87[CHB][hapmap]
rs4842828	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916604	chr12:86966256-87275268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv559692	chr12:87098055-87263693	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv455682	chr12:87194510-87274871	Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87194600-87195200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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