Variant report

Variant	rs446513
Chromosome Location	chr7:101808128-101808129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr7:101808089-101808322	PANC-1	pancreas:	n/a	n/a
2	TCF7L2	chr7:101808085-101808421	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:101806322..101808556-chr7:101810641..101812988,3	MCF-7	breast:
2	chr7:101796852..101799791-chr7:101806460..101809291,3	K562	blood:
3	chr7:101797026..101799791-chr7:101807613..101809594,2	K562	blood:

Variant related genes	Relation type
ENSG00000230110	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10263474	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs104933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972888	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11973970	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11977667	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11982785	0.93[EUR][1000 genomes]
rs17135076	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1734614	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051962	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2529097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34746794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs364466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380967	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs388592	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392286	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs397479	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411030	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436090	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs442030	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57673817	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59476027	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59822540	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6954742	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969463	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73408058	0.83[EUR][1000 genomes]
rs73408093	0.95[EUR][1000 genomes]
rs73408094	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73412026	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412034	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73412036	0.88[EUR][1000 genomes]
rs965863	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101790800-101811800	Weak transcription	Osteobl	bone
9	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
15	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
17	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
18	chr7:101797200-101812800	Weak transcription	HSMM	muscle
19	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
20	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
25	chr7:101797400-101809600	Weak transcription	HSMMtube	muscle
26	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:101797800-101852200	Weak transcription	NHEK	skin
28	chr7:101798200-101812800	Weak transcription	Brain Anterior Caudate	brain
29	chr7:101798400-101809400	Weak transcription	Fetal Brain Female	brain
30	chr7:101798600-101812600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:101799800-101812600	Weak transcription	Fetal Kidney	kidney
32	chr7:101799800-101815000	Weak transcription	K562	blood
33	chr7:101800000-101811600	Strong transcription	Fetal Stomach	stomach
34	chr7:101800000-101812800	Weak transcription	NHDF-Ad	bronchial
35	chr7:101800400-101809000	Weak transcription	Right Ventricle	heart
36	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:101800600-101812800	Weak transcription	Fetal Brain Male	brain
38	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
39	chr7:101801000-101810200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:101801000-101810400	Strong transcription	Fetal Intestine Large	intestine
41	chr7:101801200-101819800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:101802000-101812000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr7:101802200-101809000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:101802200-101809200	Weak transcription	Esophagus	oesophagus
46	chr7:101802200-101812800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:101802200-101812800	Weak transcription	Ovary	ovary
48	chr7:101802200-101813000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:101802600-101810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:101802800-101809600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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