Variant report
| Variant | rs4469891 |
|---|---|
| Chromosome Location | chr11:23773848-23773849 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11027474 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11819925 | 1.00[ASN][1000 genomes] |
| rs11820608 | 1.00[ASN][1000 genomes] |
| rs11820669 | 1.00[ASN][1000 genomes] |
| rs11822638 | 1.00[ASN][1000 genomes] |
| rs11825290 | 1.00[ASN][1000 genomes] |
| rs11826810 | 1.00[ASN][1000 genomes] |
| rs11827258 | 1.00[ASN][1000 genomes] |
| rs11827769 | 1.00[ASN][1000 genomes] |
| rs11828544 | 1.00[ASN][1000 genomes] |
| rs12269859 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4265597 | 1.00[ASN][1000 genomes] |
| rs4317983 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4337039 | 1.00[ASN][1000 genomes] |
| rs4533035 | 1.00[ASN][1000 genomes] |
| rs57681918 | 1.00[ASN][1000 genomes] |
| rs61699497 | 1.00[ASN][1000 genomes] |
| rs61876062 | 1.00[ASN][1000 genomes] |
| rs61876063 | 1.00[ASN][1000 genomes] |
| rs61876065 | 1.00[ASN][1000 genomes] |
| rs61876067 | 1.00[ASN][1000 genomes] |
| rs61876068 | 1.00[ASN][1000 genomes] |
| rs61876071 | 1.00[ASN][1000 genomes] |
| rs73439870 | 1.00[ASN][1000 genomes] |
| rs73439876 | 1.00[ASN][1000 genomes] |
| rs9651582 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553757 | chr11:23564329-23896729 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv916840 | chr11:23710275-24064119 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv897063 | chr11:23723766-23940407 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv897064 | chr11:23767292-23859991 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv897065 | chr11:23767292-23882931 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23771600-23776600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr11:23772000-23776600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr11:23772400-23782400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
