Variant report

Variant	rs4471766
Chromosome Location	chr18:30446944-30446945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16963968	1.00[AMR][1000 genomes]
rs56821861	1.00[AMR][1000 genomes]
rs59335071	1.00[AMR][1000 genomes]
rs6506997	1.00[AMR][1000 genomes]
rs8098616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8099779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9948079	1.00[AMR][1000 genomes]
rs9949751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9950337	0.89[AFR][1000 genomes]
rs9954070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30442600-30447000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr18:30444400-30447600	Weak transcription	Fetal Brain Male	brain
3	chr18:30446000-30453600	Enhancers	Primary B cells from peripheral blood	blood
4	chr18:30446400-30447000	Enhancers	Primary B cells from cord blood	blood
5	chr18:30446600-30449800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links