Variant report

Variant	rs4473594
Chromosome Location	chr3:46337356-46337357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10510750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11574442	1.00[AFR][1000 genomes]
rs11575062	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11919884	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11919943	0.87[CEU][hapmap]
rs11926063	1.00[CEU][hapmap]
rs13065351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067058	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap]
rs13068145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070099	1.00[CEU][hapmap]
rs13071469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13073976	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075270	1.00[CEU][hapmap]
rs13075836	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13077302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080757	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13088766	1.00[CEU][hapmap]
rs13092160	1.00[CEU][hapmap]
rs13093063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095946	1.00[CEU][hapmap]
rs13096307	1.00[CEU][hapmap]
rs13096325	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13096371	1.00[CEU][hapmap]
rs13096808	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13096905	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13097340	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13100243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542755	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap]
rs17141079	0.86[ASN][1000 genomes]
rs17217831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17283712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17284138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17284187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17285143	1.00[AFR][1000 genomes]
rs17715106	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17765882	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17782551	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17782618	0.82[ASN][1000 genomes]
rs17782636	0.82[ASN][1000 genomes]
rs1894387	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1894388	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2157053	1.00[AFR][1000 genomes]
rs2157055	1.00[AFR][1000 genomes]
rs2373156	1.00[CEU][hapmap]
rs2373245	1.00[AFR][1000 genomes]
rs2373250	1.00[AFR][1000 genomes]
rs2373251	1.00[AFR][1000 genomes]
rs2856762	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28677778	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3091310	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3091314	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3092957	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3092958	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3092959	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3136667	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3176825	1.00[CEU][hapmap]
rs3176826	1.00[CEU][hapmap]
rs3181038	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3181076	1.00[CEU][hapmap]
rs3181080	1.00[CEU][hapmap]
rs3204850	1.00[AFR][1000 genomes]
rs34024447	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34041956	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34073838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34079287	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34106161	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34158148	0.86[ASN][1000 genomes]
rs34180919	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34190223	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34200951	0.82[ASN][1000 genomes]
rs34265215	1.00[AFR][1000 genomes]
rs34272024	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34351442	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34363105	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34406035	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34448949	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34455547	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34473395	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34578126	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34709208	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34883716	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34953706	0.86[ASN][1000 genomes]
rs34988015	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34997818	1.00[AFR][1000 genomes]
rs35035328	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35117954	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35148665	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35203745	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35218998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35260614	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35367413	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35373513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413141	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35438577	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35479331	0.86[ASN][1000 genomes]
rs35511592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35513549	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35516519	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35568430	1.00[AFR][1000 genomes]
rs35577626	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35601704	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35646896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35821444	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35878193	0.82[ASN][1000 genomes]
rs35943069	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36030692	1.00[AFR][1000 genomes]
rs36048333	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36052732	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36078103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749461	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3918354	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3918362	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3918365	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3918368	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4987053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6775046	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs6777875	0.86[ASN][1000 genomes]
rs6793370	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803341	0.81[EUR][1000 genomes]
rs6806951	0.82[ASN][1000 genomes]
rs71327047	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71327048	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71327052	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327053	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327054	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327055	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327056	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327057	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327059	0.86[ASN][1000 genomes]
rs71327061	0.86[ASN][1000 genomes]
rs71327062	0.82[ASN][1000 genomes]
rs71327063	1.00[AFR][1000 genomes]
rs71615445	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71622511	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7620586	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7624155	1.00[CEU][hapmap]
rs7628489	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7631551	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7649905	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651539	1.00[CEU][hapmap]
rs916092	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9714000	1.00[AFR][1000 genomes]
rs9810242	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832730	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9838191	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9872023	1.00[EUR][1000 genomes]
rs9882616	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46327200-46337800	Weak transcription	Dnd41	blood
2	chr3:46329200-46338600	Weak transcription	Thymus	Thymus
3	chr3:46334800-46339200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:46335000-46345400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:46335400-46342800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:46335600-46338600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:46335600-46338600	Weak transcription	Spleen	Spleen
8	chr3:46336000-46337400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:46336200-46337600	Weak transcription	Fetal Thymus	thymus
10	chr3:46336200-46337800	Enhancers	GM12878-XiMat	blood
11	chr3:46336200-46339000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:46336400-46338400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:46336400-46338600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:46336400-46338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:46336400-46339000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:46336400-46339200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr3:46336600-46338000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:46336600-46338600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:46336600-46339200	Weak transcription	Primary B cells from cord blood	blood
20	chr3:46336800-46337600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:46336800-46338000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:46336800-46338200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:46336800-46338400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:46336800-46338600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:46337200-46337400	Enhancers	Primary T helper cells fromperipheralblood	blood

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