Variant report
| Variant | rs4475294 |
|---|---|
| Chromosome Location | chr6:80497169-80497170 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:80488032..80490000-chr6:80496422..80499072,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16891071 | 1.00[AMR][1000 genomes] |
| rs239510 | 1.00[CEU][hapmap] |
| rs57244257 | 1.00[AMR][1000 genomes] |
| rs59857395 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60487643 | 1.00[AMR][1000 genomes] |
| rs6941611 | 1.00[EUR][1000 genomes] |
| rs73463469 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73463498 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73465409 | 1.00[AMR][1000 genomes] |
| rs73465417 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73465431 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73465437 | 1.00[AMR][1000 genomes] |
| rs73465453 | 1.00[AMR][1000 genomes] |
| rs73465462 | 1.00[AMR][1000 genomes] |
| rs73465471 | 1.00[AMR][1000 genomes] |
| rs73465478 | 1.00[AMR][1000 genomes] |
| rs73465490 | 1.00[AMR][1000 genomes] |
| rs73465492 | 1.00[AMR][1000 genomes] |
| rs73465496 | 1.00[AMR][1000 genomes] |
| rs73467406 | 1.00[AMR][1000 genomes] |
| rs73467446 | 1.00[AMR][1000 genomes] |
| rs73467451 | 1.00[AMR][1000 genomes] |
| rs73467456 | 1.00[AMR][1000 genomes] |
| rs73467458 | 1.00[AMR][1000 genomes] |
| rs73467465 | 1.00[AMR][1000 genomes] |
| rs73467468 | 1.00[AMR][1000 genomes] |
| rs73467479 | 1.00[AMR][1000 genomes] |
| rs73469630 | 1.00[AMR][1000 genomes] |
| rs73471893 | 1.00[AMR][1000 genomes] |
| rs73474017 | 1.00[AMR][1000 genomes] |
| rs7748175 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032347 | chr6:80284809-80694778 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021143 | chr6:80400195-80598163 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80488400-80502200 | Weak transcription | Fetal Brain Male | brain |
