Variant report

Variant	rs4486849
Chromosome Location	chr15:34509885-34509886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34500858..34503778-chr15:34509376..34510896,2	MCF-7	breast:
2	chr15:34507802..34510107-chr15:34514805..34516996,3	K562	blood:
3	chr15:34509090..34511526-chr15:34517586..34519946,2	MCF-7	breast:
4	chr15:34501162..34503390-chr15:34507546..34510733,3	K562	blood:
5	chr15:34499403..34506943-chr15:34508287..34513350,9	K562	blood:
6	chr15:34507877..34510107-chr15:34514805..34516525,2	K562	blood:
7	chr15:34499153..34500903-chr15:34508468..34510016,2	K562	blood:

Variant related genes	Relation type
ENSG00000128463	Chromatin interaction
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10152261	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852315	0.88[ASN][1000 genomes]
rs11853345	0.88[ASN][1000 genomes]
rs11853347	0.88[ASN][1000 genomes]
rs11854298	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11856753	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857604	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11857608	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11858527	0.88[ASN][1000 genomes]
rs17236749	0.88[ASN][1000 genomes]
rs17554484	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817770	0.88[ASN][1000 genomes]
rs2118159	0.88[ASN][1000 genomes]
rs2118160	0.88[ASN][1000 genomes]
rs28406544	0.88[ASN][1000 genomes]
rs3764236	0.88[ASN][1000 genomes]
rs3829483	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41405647	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581678	0.88[ASN][1000 genomes]
rs55801303	0.88[ASN][1000 genomes]
rs6495624	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161944	0.88[ASN][1000 genomes]
rs7168139	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7176526	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7179249	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7183568	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382081	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73382086	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73384011	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7497666	0.83[ASN][1000 genomes]
rs8037674	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672345	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672434	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672496	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9672544	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9672784	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806468	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34502600-34510000	Weak transcription	NHLF	lung
2	chr15:34505000-34510200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:34507200-34516200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:34509200-34510400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:34509200-34510400	Enhancers	NHDF-Ad	bronchial
6	chr15:34509200-34510600	Enhancers	Hela-S3	cervix
7	chr15:34509600-34510200	Enhancers	K562	blood
8	chr15:34509600-34510400	Enhancers	NHEK	skin
9	chr15:34509600-34510600	Enhancers	HMEC	breast
10	chr15:34509600-34510600	Enhancers	NH-A	brain
11	chr15:34509800-34510200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:34509800-34510200	Enhancers	HUVEC	blood vessel
13	chr15:34509800-34510400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:34509800-34510400	Enhancers	HSMM	muscle
15	chr15:34509800-34510400	Enhancers	HSMMtube	muscle
16	chr15:34509800-34510400	Enhancers	Osteobl	bone
17	chr15:34509800-34510600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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