Variant report

Variant	rs448775
Chromosome Location	chr7:101868778-101868779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101865264..101867449-chr7:101868717..101870646,2	K562	blood:
2	chr7:101856074..101857584-chr7:101867907..101869500,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10270614	0.92[CEU][hapmap];0.85[CHB][hapmap]
rs1108056	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11540899	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12537077	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs372968	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs375445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs382947	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385417	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs408425	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs409224	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410697	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41275218	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs420920	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs426954	0.87[ASN][1000 genomes]
rs427941	0.85[ASN][1000 genomes]
rs434624	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs437060	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs445646	0.87[ASN][1000 genomes]
rs448665	0.85[ASN][1000 genomes]
rs449806	0.91[ASN][1000 genomes]
rs56077916	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56235745	0.87[EUR][1000 genomes]
rs60987662	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67531258	0.87[EUR][1000 genomes]
rs6976947	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7801220	0.87[CEU][hapmap]
rs7801259	0.89[CEU][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101829400-101870800	Weak transcription	Small Intestine	intestine
2	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
4	chr7:101847000-101877200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:101848800-101872000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:101849200-101870400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:101849400-101870600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:101849600-101870600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:101849600-101875600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:101849800-101871400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:101849800-101877400	Weak transcription	Hela-S3	cervix
12	chr7:101852200-101870400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:101852600-101870600	Weak transcription	Aorta	Aorta
15	chr7:101852600-101872000	Weak transcription	Brain Anterior Caudate	brain
16	chr7:101852800-101870600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:101852800-101897000	Weak transcription	NHEK	skin
18	chr7:101854200-101870600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:101854200-101871000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:101854400-101870200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:101854400-101870600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:101854400-101870800	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:101854400-101871200	Weak transcription	Brain Angular Gyrus	brain
24	chr7:101854400-101871800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:101854400-101879800	Weak transcription	Brain Substantia Nigra	brain
26	chr7:101854400-101894800	Weak transcription	K562	blood
27	chr7:101854600-101870800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:101854600-101871400	Weak transcription	HepG2	liver
29	chr7:101854600-101879600	Strong transcription	Fetal Intestine Small	intestine
30	chr7:101855400-101871600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr7:101855600-101870600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:101855600-101870600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:101855600-101870600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:101855600-101870800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:101855800-101870600	Weak transcription	Left Ventricle	heart
36	chr7:101855800-101871000	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:101856600-101870800	Weak transcription	Primary B cells from cord blood	blood
38	chr7:101856800-101870200	Weak transcription	Liver	Liver
39	chr7:101857200-101883400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
41	chr7:101858600-101870400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:101858800-101870600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:101858800-101879000	Weak transcription	Right Atrium	heart
44	chr7:101859200-101870600	Weak transcription	A549	lung
45	chr7:101859200-101870800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:101859400-101870400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:101859400-101870600	Weak transcription	Esophagus	oesophagus
48	chr7:101859400-101870600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:101859400-101870800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:101859400-101870800	Weak transcription	Adipose Nuclei	Adipose

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