Variant report

Variant	rs4488269
Chromosome Location	chr12:86912367-86912368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11103930	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11616058	0.87[YRI][hapmap]
rs11829592	0.89[YRI][hapmap]
rs11830208	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11834119	0.89[YRI][hapmap]
rs11835193	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12302310	1.00[EUR][1000 genomes]
rs12302551	1.00[EUR][1000 genomes]
rs12303046	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12319593	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12579580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12581639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12581912	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs12582767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013981	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs17014005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs17014008	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs17014009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17014026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17040806	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1986602	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs1986603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2141927	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2195229	0.87[YRI][hapmap]
rs2405793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405929	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2405931	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2406160	0.84[JPT][hapmap]
rs2897240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2897275	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4370997	0.84[JPT][hapmap]
rs4417380	0.89[YRI][hapmap]
rs4526834	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4636736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60902071	1.00[EUR][1000 genomes]
rs61359740	1.00[EUR][1000 genomes]
rs7301129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs73385292	1.00[EUR][1000 genomes]
rs73385293	1.00[EUR][1000 genomes]
rs73387865	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7485159	0.89[YRI][hapmap]
rs7961251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7980126	0.88[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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