Variant report

Variant	rs4494721
Chromosome Location	chr2:33836458-33836459
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10166099	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs10168254	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10173763	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10186755	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10197783	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1078626	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11677823	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11687252	0.99[ASN][1000 genomes]
rs11892899	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12468142	0.86[ASN][1000 genomes]
rs13391382	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2367811	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2887088	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4499406	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670228	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670229	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670815	0.85[ASN][1000 genomes]
rs4670817	0.85[ASN][1000 genomes]
rs6543722	0.98[ASN][1000 genomes]
rs6543728	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6707566	0.94[ASN][1000 genomes]
rs6707694	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6722975	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6748630	0.89[ASN][1000 genomes]
rs6757234	0.96[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs723241	0.82[JPT][hapmap]
rs723242	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7572639	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7604454	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4494721	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:33833800-33836800	Weak transcription	Ovary	ovary
4	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
5	chr2:33834000-33837400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
7	chr2:33834400-33836800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr2:33834600-33837000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr2:33834800-33837000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr2:33834800-33837400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:33835000-33837200	ZNF genes & repeats	Placenta	Placenta
12	chr2:33835400-33837200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:33835800-33838400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:33836000-33838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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