Variant report

Variant	rs449785
Chromosome Location	chr7:101878907-101878908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101873898..101875404-chr7:101876644..101879254,2	K562	blood:
2	chr7:101330630..101332814-chr7:101878417..101880968,2	K562	blood:
3	chr7:101582943..101584775-chr7:101877100..101879982,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10270614	0.88[EUR][1000 genomes]
rs10808119	0.88[EUR][1000 genomes]
rs368058	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs369547	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs402529	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs407943	0.89[EUR][1000 genomes]
rs416276	0.89[EUR][1000 genomes]
rs423452	0.89[EUR][1000 genomes]
rs426954	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs427941	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs438635	0.89[EUR][1000 genomes]
rs445646	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs448665	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs449806	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6465852	0.89[EUR][1000 genomes]
rs6970036	0.88[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101879800	Weak transcription	Brain Substantia Nigra	brain
6	chr7:101854400-101894800	Weak transcription	K562	blood
7	chr7:101854600-101879600	Strong transcription	Fetal Intestine Small	intestine
8	chr7:101857200-101883400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
10	chr7:101858800-101879000	Weak transcription	Right Atrium	heart
11	chr7:101860200-101883600	Weak transcription	Fetal Kidney	kidney
12	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:101865200-101880000	Strong transcription	Fetal Stomach	stomach
14	chr7:101865400-101884600	Weak transcription	HUVEC	blood vessel
15	chr7:101865600-101880200	Weak transcription	Fetal Brain Male	brain
16	chr7:101866000-101892600	Weak transcription	Osteobl	bone
17	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:101866800-101907600	Weak transcription	NH-A	brain
19	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:101867800-101879600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:101869000-101879600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
27	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:101870600-101879400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr7:101870600-101879600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:101870600-101881200	Strong transcription	Lung	lung
32	chr7:101871200-101884600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:101871800-101882600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
36	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr7:101872600-101882000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:101872600-101882600	Weak transcription	Colonic Mucosa	Colon
39	chr7:101872600-101882600	Weak transcription	NHLF	lung
40	chr7:101872600-101884400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
42	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:101872800-101882600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
45	chr7:101873400-101882400	Weak transcription	Brain Germinal Matrix	brain
46	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:101874200-101879800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:101874200-101879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:101874800-101881000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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