Variant report

Variant	rs4498663
Chromosome Location	chr9:100720265-100720266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10984349	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10984375	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10984462	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10984478	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10984484	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10984588	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10984599	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1127703	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12235434	0.82[EUR][1000 genomes]
rs12236440	0.82[EUR][1000 genomes]
rs12237296	0.82[EUR][1000 genomes]
rs3780416	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3780417	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3780418	0.85[EUR][1000 genomes]
rs3780419	0.83[EUR][1000 genomes]
rs4618817	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67975003	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68053069	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025609	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72753572	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72753587	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7864655	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr9:100717600-100721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:100717800-100721000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100718000-100721000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:100719600-100720600	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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