Variant report

Variant	rs4502776
Chromosome Location	chr5:59593898-59593899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13165296	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13168619	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13172481	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16874969	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs34038162	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35335033	0.81[EUR][1000 genomes]
rs35644384	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35914313	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699954	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs56341652	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6860626	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6861084	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6862735	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6869495	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs71630006	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7706560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7711093	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7733705	0.94[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7735958	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59593200-59594000	Enhancers	Fetal Brain Female	brain
2	chr5:59593400-59594400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:59593400-59594600	Enhancers	Fetal Brain Male	brain
4	chr5:59593600-59594000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:59593800-59594600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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