Variant report

Variant	rs4505412
Chromosome Location	chr18:30879107-30879108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11081796	0.97[ASN][1000 genomes]
rs12150734	0.96[ASN][1000 genomes]
rs12150736	0.96[ASN][1000 genomes]
rs12150837	0.96[ASN][1000 genomes]
rs1391025	0.84[ASN][1000 genomes]
rs156368	0.88[CEU][hapmap]
rs16964459	0.84[ASN][1000 genomes]
rs271531	0.81[ASN][1000 genomes]
rs271532	0.81[ASN][1000 genomes]
rs271537	0.81[ASN][1000 genomes]
rs271538	0.81[ASN][1000 genomes]
rs271539	0.81[ASN][1000 genomes]
rs271540	0.81[ASN][1000 genomes]
rs271585	0.88[CEU][hapmap]
rs28374541	0.96[ASN][1000 genomes]
rs28375135	0.96[ASN][1000 genomes]
rs28394340	0.84[ASN][1000 genomes]
rs28457646	0.96[ASN][1000 genomes]
rs28521216	0.94[ASN][1000 genomes]
rs28633937	0.96[ASN][1000 genomes]
rs418480	0.88[CEU][hapmap]
rs4319841	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4383225	0.84[ASN][1000 genomes]
rs4405623	0.84[ASN][1000 genomes]
rs4432316	0.84[ASN][1000 genomes]
rs4455039	0.84[ASN][1000 genomes]
rs4494628	0.84[ASN][1000 genomes]
rs4573999	0.84[ASN][1000 genomes]
rs4600534	0.84[ASN][1000 genomes]
rs4630625	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4632197	0.84[ASN][1000 genomes]
rs4633796	0.84[ASN][1000 genomes]
rs466500	0.88[CEU][hapmap]
rs466881	0.81[ASN][1000 genomes]
rs56168034	0.83[ASN][1000 genomes]
rs56675518	0.96[ASN][1000 genomes]
rs56959895	0.84[ASN][1000 genomes]
rs57082165	0.94[ASN][1000 genomes]
rs57204429	0.83[ASN][1000 genomes]
rs57358360	0.84[ASN][1000 genomes]
rs58448816	0.96[ASN][1000 genomes]
rs59342170	0.96[ASN][1000 genomes]
rs66481582	0.96[ASN][1000 genomes]
rs66560059	0.96[ASN][1000 genomes]
rs66714151	0.96[ASN][1000 genomes]
rs67134528	0.96[ASN][1000 genomes]
rs67274971	0.96[ASN][1000 genomes]
rs67373469	0.94[ASN][1000 genomes]
rs67560478	0.96[ASN][1000 genomes]
rs67772507	0.83[ASN][1000 genomes]
rs67783924	0.96[ASN][1000 genomes]
rs67881407	0.83[ASN][1000 genomes]
rs68068381	0.96[ASN][1000 genomes]
rs68190773	0.83[ASN][1000 genomes]
rs72948837	0.99[ASN][1000 genomes]
rs72948842	0.99[ASN][1000 genomes]
rs72949130	0.83[ASN][1000 genomes]
rs72951055	0.96[ASN][1000 genomes]
rs72951085	0.96[ASN][1000 genomes]
rs7351024	0.96[ASN][1000 genomes]
rs7351029	0.96[ASN][1000 genomes]
rs9951961	0.96[ASN][1000 genomes]
rs9952144	0.96[ASN][1000 genomes]
rs9953737	0.83[ASN][1000 genomes]
rs9962637	0.96[ASN][1000 genomes]
rs9962832	0.96[ASN][1000 genomes]
rs9962884	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv576640	chr18:30854237-30930418	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv576641	chr18:30856949-30930418	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv1063958	chr18:30862717-30931616	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2762000	chr18:30862729-30931628	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv909528	chr18:30875118-31011926	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30877200-30880400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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