Variant report

Variant	rs4505944
Chromosome Location	chr5:17063270-17063271
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr5:17062074-17063401	A549	lung:	n/a	n/a
2	NFYB	chr5:17062736-17063395	K562	blood:	n/a	chr5:17063054-17063069 chr5:17063013-17063028
3	NFYB	chr5:17062902-17063302	GM12878	blood:	n/a	chr5:17063054-17063069 chr5:17063013-17063028
4	NFYA	chr5:17062897-17063311	K562	blood:	n/a	chr5:17063057-17063075
5	NFYB	chr5:17062896-17063329	Hela-S3	cervix:	n/a	chr5:17063054-17063069 chr5:17063013-17063028

Variant related genes	Relation type
BASP1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10065034	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068569	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10072683	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078074	1.00[AMR][1000 genomes]
rs10462740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10866519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4267873	1.00[AMR][1000 genomes]
rs4314398	1.00[AMR][1000 genomes]
rs4327598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4334884	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4348214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4360043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4461629	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4583886	1.00[AMR][1000 genomes]
rs4702191	1.00[AMR][1000 genomes]
rs4702200	1.00[AMR][1000 genomes]
rs6554976	1.00[AMR][1000 genomes]
rs6554980	1.00[AMR][1000 genomes]
rs6888500	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6894481	1.00[AMR][1000 genomes]
rs7706452	1.00[AMR][1000 genomes]
rs7723573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015247	chr5:16748966-17133274	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv3510797	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3510798	chr5:16966764-17125849	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1795984	chr5:16973769-17078295	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1017222	chr5:17001819-17133274	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1021972	chr5:17011758-17091878	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1026025	chr5:17039665-17195440	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv968878	chr5:17060812-17067987	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17056800-17064600	Weak transcription	Ovary	ovary
2	chr5:17060000-17068200	Weak transcription	Stomach Mucosa	stomach
3	chr5:17062600-17064200	Weak transcription	A549	lung
4	chr5:17062600-17066800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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