Variant report

Variant	rs4508560
Chromosome Location	chr2:181867185-181867186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181866269..181868197-chr2:181870561..181872508,2	K562	blood:
2	chr2:181863297..181865985-chr2:181866016..181869625,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10183291	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs10207300	0.84[CEU][hapmap];0.84[TSI][hapmap]
rs10432490	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs10803945	0.85[CEU][hapmap]
rs10930949	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs10930951	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs11902305	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12475075	0.85[CEU][hapmap]
rs12477135	0.85[CEU][hapmap]
rs12613470	0.89[CEU][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs12614444	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs1949453	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2030242	0.82[EUR][1000 genomes]
rs34865829	0.80[EUR][1000 genomes]
rs4286243	0.83[EUR][1000 genomes]
rs4299301	0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4414647	0.80[EUR][1000 genomes]
rs4638755	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs6729509	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs873256	0.85[CEU][hapmap]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846400-181868600	Weak transcription	Gastric	stomach
2	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:181847000-181870000	Weak transcription	Pancreas	Pancrea
4	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:181847400-181870000	Weak transcription	Right Ventricle	heart
6	chr2:181847600-181868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
8	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:181850800-181869800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:181851000-181870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:181851000-181872200	Weak transcription	Left Ventricle	heart
13	chr2:181851200-181876200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:181853000-181869800	Weak transcription	Brain Angular Gyrus	brain
15	chr2:181853000-181869800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:181854600-181872800	Weak transcription	NHLF	lung
17	chr2:181855200-181871000	Weak transcription	HUVEC	blood vessel
18	chr2:181855600-181872400	Weak transcription	Adipose Nuclei	Adipose
19	chr2:181856200-181870200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:181856800-181872800	Weak transcription	NHDF-Ad	bronchial
21	chr2:181856800-181873200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr2:181856800-181873200	Weak transcription	Fetal Kidney	kidney
23	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
24	chr2:181857200-181869200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:181857400-181870600	Weak transcription	Aorta	Aorta
26	chr2:181857400-181875000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:181857600-181869800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:181857600-181872400	Weak transcription	Fetal Stomach	stomach
29	chr2:181857600-181873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr2:181857600-181879200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:181858200-181869600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:181858200-181873000	Weak transcription	Psoas Muscle	Psoas
34	chr2:181858200-181873200	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:181858200-181878000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:181858400-181874400	Weak transcription	Osteobl	bone
37	chr2:181858600-181873800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:181858800-181869800	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:181858800-181870000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:181859200-181871400	Weak transcription	HMEC	breast
41	chr2:181859600-181867600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr2:181860000-181873000	Weak transcription	NH-A	brain
43	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr2:181860200-181871600	Weak transcription	HSMM	muscle
45	chr2:181861400-181875000	Weak transcription	Primary T cells from cord blood	blood
46	chr2:181862200-181869600	Weak transcription	HepG2	liver
47	chr2:181863200-181869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:181863600-181872400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr2:181864400-181869200	Weak transcription	K562	blood
50	chr2:181864400-181872800	Weak transcription	Muscle Satellite Cultured Cells	--

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