Variant report

Variant	rs4508853
Chromosome Location	chr4:47485111-47485112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10021832	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs12643603	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34200884	0.87[ASN][1000 genomes]
rs35760816	0.90[ASN][1000 genomes]
rs4420957	0.93[ASN][1000 genomes]
rs4438736	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs4571306	0.93[ASN][1000 genomes]
rs4577551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58951455	0.85[ASN][1000 genomes]
rs6823873	0.93[ASN][1000 genomes]
rs6844173	0.95[ASN][1000 genomes]
rs7683828	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:47476600-47485800	Weak transcription	Placenta	Placenta
3	chr4:47481000-47487000	Weak transcription	Esophagus	oesophagus
4	chr4:47481200-47486400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:47483600-47485200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:47484000-47485200	Enhancers	HSMM	muscle
7	chr4:47484000-47485200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:47484000-47485800	Enhancers	NHEK	skin
9	chr4:47484000-47486000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:47484000-47486600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:47484000-47487200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:47484600-47485800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:47484600-47485800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:47484600-47486000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:47484600-47486200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:47484600-47486800	Weak transcription	HUVEC	blood vessel
17	chr4:47484800-47485800	Weak transcription	GM12878-XiMat	blood
18	chr4:47484800-47485800	Weak transcription	HMEC	breast
19	chr4:47484800-47486000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:47484800-47486600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr4:47484800-47486800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:47484800-47486800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:47484800-47486800	Weak transcription	NH-A	brain
24	chr4:47484800-47487000	Weak transcription	NHLF	lung
25	chr4:47485000-47486000	Weak transcription	Primary B cells from cord blood	blood
26	chr4:47485000-47486800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:47485000-47486800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links