Variant report

Variant	rs4510177
Chromosome Location	chr2:181841245-181841246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181839700..181842326-chr2:181868169..181869713,2	K562	blood:
2	chr2:181837058..181842990-chr2:181843184..181846817,5	MCF-7	breast:
3	chr2:181837425..181840386-chr2:181840573..181842119,2	MCF-7	breast:
4	chr2:181839506..181842433-chr2:181971642..181974430,2	K562	blood:

Variant related genes	Relation type
ENSG00000170035	Chromatin interaction
ENSG00000236153	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10171108	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10171998	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10187842	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10930950	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs11692072	0.80[EUR][1000 genomes]
rs12621277	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12989967	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13020845	0.82[CHB][hapmap]
rs13029368	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs1829365	0.85[ASN][1000 genomes]
rs4346343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4366861	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4595925	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667005	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667008	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4990275	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433878	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433879	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6433883	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6433892	0.82[CHB][hapmap]
rs6704750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6710650	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs6731268	0.95[CEU][hapmap]
rs6743720	0.83[AMR][1000 genomes]
rs6744130	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6745190	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7371639	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap]
rs7559803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7569991	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs9808318	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181839600-181844200	Weak transcription	HSMM	muscle
2	chr2:181840400-181842400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:181840600-181843600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:181840600-181843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:181840600-181844000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:181840800-181843800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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