Variant report

Variant	rs4511849
Chromosome Location	chr3:155870018-155870019
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155869753..155870360-chr3:156258546..156259049,2	K562	blood:
2	chr3:155869333..155870149-chr3:156919186..156919689,2	K562	blood:
3	chr3:155869288..155870259-chr3:156227206..156228043,3	MCF-7	breast:
4	chr3:155869321..155870239-chr3:156099929..156100470,4	K562	blood:
5	chr3:155869353..155870217-chr3:156391481..156391983,2	K562	blood:
6	chr3:155869736..155870260-chr3:156192819..156193450,2	MCF-7	breast:
7	chr3:155869205..155870233-chr3:156227404..156228192,3	K562	blood:
8	chr3:155869742..155871357-chr3:155874306..155876247,2	K562	blood:
9	chr3:155869062..155870058-chr3:156191392..156192210,2	MCF-7	breast:
10	chr3:155869037..155871183-chr3:156875218..156876767,2	K562	blood:
11	chr3:155869256..155870827-chr3:156099723..156101077,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4234309	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155865600-155870200	Enhancers	Fetal Heart	heart
2	chr3:155866000-155870200	Enhancers	Brain Hippocampus Middle	brain
3	chr3:155866800-155870200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:155866800-155870200	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:155868600-155873200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:155869600-155870200	Enhancers	Brain Anterior Caudate	brain
7	chr3:155869600-155870200	Enhancers	Fetal Stomach	stomach
8	chr3:155869600-155870200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:155869600-155870800	Enhancers	Colon Smooth Muscle	Colon
10	chr3:155869800-155870200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:155869800-155870200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:155869800-155870200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:155869800-155870200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:155869800-155870200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:155869800-155870200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr3:155869800-155870200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:155869800-155870200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:155869800-155870200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:155869800-155870200	Enhancers	Adipose Nuclei	Adipose
20	chr3:155869800-155870200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:155869800-155870200	Enhancers	Colonic Mucosa	Colon
22	chr3:155869800-155870200	Enhancers	Esophagus	oesophagus
23	chr3:155869800-155870200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:155869800-155870200	Enhancers	Fetal Muscle Trunk	muscle
25	chr3:155869800-155870200	Enhancers	Fetal Muscle Leg	muscle
26	chr3:155869800-155870200	Enhancers	Fetal Thymus	thymus
27	chr3:155869800-155870200	Enhancers	Left Ventricle	heart
28	chr3:155869800-155870200	Enhancers	Pancreas	Pancrea
29	chr3:155869800-155870200	Enhancers	Stomach Mucosa	stomach
30	chr3:155869800-155870200	Enhancers	Hela-S3	cervix
31	chr3:155869800-155870200	Enhancers	NH-A	brain
32	chr3:155869800-155870200	Enhancers	Osteobl	bone
33	chr3:155869800-155870400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:155869800-155870400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr3:155869800-155870400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr3:155869800-155870400	Enhancers	Stomach Smooth Muscle	stomach
37	chr3:155869800-155870800	Enhancers	Rectal Smooth Muscle	rectum
38	chr3:155870000-155870200	Enhancers	Right Atrium	heart
39	chr3:155870000-155870200	Enhancers	NHEK	skin
40	chr3:155870000-155870400	Enhancers	Aorta	Aorta
41	chr3:155870000-155870600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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