Variant report

Variant	rs4512717
Chromosome Location	chr1:211288097-211288098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11119680	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11119684	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11119690	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11119698	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12036302	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12119695	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1338351	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1933523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2066023	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2066024	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3811395	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58722379	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663683	0.88[EUR][1000 genomes]
rs72741110	0.95[ASN][1000 genomes]
rs7525019	0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4512717	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211280800-211290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
3	chr1:211285600-211299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:211287000-211289600	Weak transcription	HSMM	muscle
5	chr1:211287800-211291600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:211288000-211292000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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