Variant report

Variant	rs451352
Chromosome Location	chr7:101807338-101807339
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101806322..101808556-chr7:101810641..101812988,3	MCF-7	breast:
2	chr7:101796852..101799791-chr7:101806460..101809291,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10270614	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808119	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1108056	0.89[ASN][1000 genomes]
rs1124297	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11540899	0.89[ASN][1000 genomes]
rs12537077	0.87[ASN][1000 genomes]
rs28485359	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs368058	0.82[EUR][1000 genomes]
rs369547	0.82[EUR][1000 genomes]
rs375233	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs376244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs402529	0.82[EUR][1000 genomes]
rs407943	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41275218	0.83[ASN][1000 genomes]
rs416276	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs423452	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs424549	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426954	0.82[EUR][1000 genomes]
rs427941	0.82[EUR][1000 genomes]
rs438635	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs439268	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs445646	0.82[EUR][1000 genomes]
rs448665	0.83[EUR][1000 genomes]
rs449806	0.83[EUR][1000 genomes]
rs56077916	0.83[ASN][1000 genomes]
rs56235745	0.87[ASN][1000 genomes]
rs6465852	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67531258	0.89[ASN][1000 genomes]
rs6970036	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6976947	0.83[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101790800-101811800	Weak transcription	Osteobl	bone
9	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
15	chr7:101797200-101807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:101797200-101807600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:101797200-101808000	Weak transcription	NHLF	lung
18	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
20	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
21	chr7:101797200-101812800	Weak transcription	HSMM	muscle
22	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
23	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
28	chr7:101797400-101809600	Weak transcription	HSMMtube	muscle
29	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:101797800-101852200	Weak transcription	NHEK	skin
31	chr7:101798200-101812800	Weak transcription	Brain Anterior Caudate	brain
32	chr7:101798400-101809400	Weak transcription	Fetal Brain Female	brain
33	chr7:101798600-101812600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:101799800-101812600	Weak transcription	Fetal Kidney	kidney
35	chr7:101799800-101815000	Weak transcription	K562	blood
36	chr7:101800000-101811600	Strong transcription	Fetal Stomach	stomach
37	chr7:101800000-101812800	Weak transcription	NHDF-Ad	bronchial
38	chr7:101800400-101807600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:101800400-101809000	Weak transcription	Right Ventricle	heart
40	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr7:101800600-101812800	Weak transcription	Fetal Brain Male	brain
42	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
43	chr7:101801000-101807400	Strong transcription	Thymus	Thymus
44	chr7:101801000-101810200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:101801000-101810400	Strong transcription	Fetal Intestine Large	intestine
46	chr7:101801200-101819800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:101802000-101812000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:101802200-101809000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:101802200-101809200	Weak transcription	Esophagus	oesophagus

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