Variant report
| Variant | rs4513902 |
|---|---|
| Chromosome Location | chr7:104305262-104305263 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | USF1 | chr7:104305135-104305386 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | USF1 | chr7:104305146-104305445 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | ZNF143 | chr7:104305171-104305436 | K562 | blood: | n/a | n/a |
| 4 | SIX5 | chr7:104305190-104305469 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | ZNF143 | chr7:104305219-104305469 | GM12878 | blood: | n/a | n/a |
| 6 | HCFC1 | chr7:104305169-104305459 | K562 | blood: | n/a | n/a |
| 7 | ZNF143 | chr7:104305127-104305511 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | SIX5 | chr7:104305216-104305500 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:104302642..104305367-chr7:104448713..104450769,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EIF4BP6 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10241057 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap] |
| rs10249877 | 0.96[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10487221 | 0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10953439 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12537797 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4268058 | 0.85[YRI][hapmap] |
| rs6943307 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7781331 | 0.87[CHB][hapmap];0.85[JPT][hapmap] |
| rs7782065 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7801387 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9885990 | 0.81[CEU][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
