Variant report
| Variant | rs4519260 |
|---|---|
| Chromosome Location | chr14:55725470-55725471 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258413 | Chromatin interaction |
| ENSG00000178974 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10131926 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10140801 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10142547 | 0.82[AMR][1000 genomes] |
| rs10142823 | 0.85[AMR][1000 genomes] |
| rs10150699 | 0.86[AMR][1000 genomes] |
| rs10467798 | 0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11547116 | 0.81[AMR][1000 genomes] |
| rs13379169 | 0.86[AMR][1000 genomes] |
| rs1952087 | 0.81[AMR][1000 genomes] |
| rs2341621 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2341622 | 0.87[AMR][1000 genomes] |
| rs61210954 | 0.81[AMR][1000 genomes] |
| rs6573009 | 0.83[AMR][1000 genomes] |
| rs6573010 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6573014 | 0.87[AMR][1000 genomes] |
| rs7142857 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7144292 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7146748 | 0.82[AMR][1000 genomes] |
| rs7146752 | 0.86[AMR][1000 genomes] |
| rs7148171 | 0.82[AMR][1000 genomes] |
| rs7158768 | 0.82[AMR][1000 genomes] |
| rs8022225 | 0.82[AMR][1000 genomes] |
| rs943590 | 0.80[AMR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4519260 | RP11-665C16.6 | cis | Muscle Skeletal | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
