Variant report

Variant	rs4520083
Chromosome Location	chr7:147370869-147370870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1404736	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1404738	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17170638	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs1830043	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2190915	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2373173	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373174	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373175	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2373176	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2888514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs2888515	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4310123	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4379380	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4383899	1.00[CHB][hapmap]
rs4383900	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4427087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4436047	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4486105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4487669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964327	1.00[CHB][hapmap]
rs6964959	1.00[CHB][hapmap]
rs6970360	1.00[CHB][hapmap]
rs731565	1.00[CHB][hapmap]
rs7457657	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs758259	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs7779787	1.00[CHB][hapmap]
rs7786677	1.00[CHB][hapmap]
rs7799323	1.00[CHB][hapmap]
rs7803219	1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs851726	1.00[CHB][hapmap]
rs851727	1.00[CHB][hapmap]
rs851734	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs971440	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147370200-147371000	Enhancers	Fetal Lung	lung
2	chr7:147370800-147374800	Weak transcription	Brain Hippocampus Middle	brain

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