Variant report
| Variant | rs4523840 |
|---|---|
| Chromosome Location | chr14:37278409-37278410 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:37228461..37230190-chr14:37276163..37278698,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000183032 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1367035 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17105233 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17105308 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17105311 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17105314 | 0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17105394 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs41434649 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs41490345 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59662346 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs60809272 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61996676 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6571762 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047290 | chr14:36564568-37445157 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037952 | chr14:36670484-37294692 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv542042 | chr14:36670484-37294692 | Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 4 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 5 | nsv1047409 | chr14:37276300-37356945 | Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:37277800-37278800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
