Variant report

Variant	rs4524093
Chromosome Location	chr2:182055300-182055301
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10153661	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1018326	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10189776	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10209191	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10930961	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10930962	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12615545	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12615998	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12616042	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12619531	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12620692	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12622612	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12693272	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13010713	0.84[AMR][1000 genomes]
rs13393689	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13405121	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1568257	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1996501	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2368187	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4233790	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4401183	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4439920	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4441425	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4444479	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4496291	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4514841	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4522566	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4563183	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4666715	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4666716	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4666717	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4667114	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667115	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667118	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667127	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4667128	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4667129	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4667130	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4667135	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56987708	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6735551	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6740034	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6744620	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7355617	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7355751	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7561880	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7580110	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7593597	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9678124	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182044000-182055400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:182045400-182062000	Weak transcription	Dnd41	blood
3	chr2:182049200-182055400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:182050800-182063400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:182053400-182055600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:182054000-182055600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:182054000-182055600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr2:182054200-182056200	Enhancers	HSMM	muscle
9	chr2:182054200-182056600	Enhancers	HSMMtube	muscle
10	chr2:182054600-182055400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:182054600-182055600	Weak transcription	Primary T cells from cord blood	blood
12	chr2:182054800-182055400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:182054800-182061400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr2:182055000-182055400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:182055200-182056000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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