Variant report

Variant	rs4524461
Chromosome Location	chr4:143463544-143463545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143393991..143396854-chr4:143462129..143463666,2	MCF-7	breast:
2	chr4:143461464..143464431-chr4:143476844..143478769,2	MCF-7	breast:
3	chr4:143457208..143458825-chr4:143463485..143465070,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10013367	0.80[ASN][1000 genomes]
rs10519649	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11100748	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11100749	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11100750	0.80[ASN][1000 genomes]
rs1160379	0.84[ASN][1000 genomes]
rs11930912	0.88[EUR][1000 genomes]
rs12504375	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12504378	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12504770	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1425518	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1425519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476122	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16998558	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17016344	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17016354	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016379	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17717651	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1963849	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1974940	0.80[ASN][1000 genomes]
rs2059510	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2059511	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2059513	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2217016	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34007357	0.84[ASN][1000 genomes]
rs34223306	0.80[ASN][1000 genomes]
rs35854467	0.89[EUR][1000 genomes]
rs4246729	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4975306	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4975312	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4975313	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4975314	0.80[ASN][1000 genomes]
rs4975316	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4975317	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4975318	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57201046	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57260347	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58899027	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61104737	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6537109	0.86[EUR][1000 genomes]
rs6537110	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67078907	0.80[ASN][1000 genomes]
rs67311549	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6814775	0.82[ASN][1000 genomes]
rs6816875	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6826090	0.80[ASN][1000 genomes]
rs7655599	0.80[ASN][1000 genomes]
rs7671198	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143444800-143468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143453000-143464000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:143456800-143468400	Weak transcription	HMEC	breast
4	chr4:143457000-143466600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:143461800-143466200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143463000-143472200	Weak transcription	Aorta	Aorta
8	chr4:143463200-143465000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:143463200-143465000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:143463200-143465200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:143463200-143465400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:143463200-143470200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:143463400-143464400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:143463400-143465400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:143463400-143468600	Weak transcription	Left Ventricle	heart

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