Variant report
| Variant | rs4527160 |
|---|---|
| Chromosome Location | chr2:213032250-213032251 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:213032041..213033643-chr2:213036583..213039398,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12694265 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13029563 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs13030421 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs13035998 | 0.92[CEU][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap] |
| rs1402765 | 0.92[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1402766 | 0.92[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1464449 | 0.88[CEU][hapmap] |
| rs1521648 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2103002 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2371477 | 0.88[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6736654 | 0.92[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6741280 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6751662 | 0.92[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6752323 | 0.88[CEU][hapmap];0.91[YRI][hapmap] |
| rs7594859 | 0.88[CEU][hapmap];0.96[YRI][hapmap] |
| rs939223 | 0.92[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs939664 | 0.87[CEU][hapmap];0.89[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
