Variant report

Variant	rs4528195
Chromosome Location	chr1:210781039-210781040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10779539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11119545	1.00[AMR][1000 genomes]
rs11119548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12145420	1.00[AMR][1000 genomes]
rs4240838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4326622	1.00[AMR][1000 genomes]
rs4357526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4369231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4402133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405138	1.00[AMR][1000 genomes]
rs4565714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845056	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845057	1.00[AMR][1000 genomes]
rs4845058	1.00[AMR][1000 genomes]
rs4845059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4845060	1.00[AMR][1000 genomes]
rs4845061	1.00[AMR][1000 genomes]
rs4845062	1.00[AMR][1000 genomes]
rs4845063	1.00[AMR][1000 genomes]
rs4845064	1.00[AMR][1000 genomes]
rs6540608	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6540609	1.00[AMR][1000 genomes]
rs6682840	1.00[AMR][1000 genomes]
rs6693375	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210774000-210782000	Weak transcription	A549	lung
2	chr1:210780000-210781400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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