Variant report

Variant	rs4528282
Chromosome Location	chr11:47011429-47011430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10466478	0.82[CHB][hapmap]
rs10501319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1060573	0.82[CHB][hapmap]
rs10769225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769228	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769234	0.82[CHB][hapmap]
rs10838635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838641	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838660	0.82[CHB][hapmap]
rs10838662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838664	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11039028	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039033	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11039057	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039074	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11039080	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11039081	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039097	0.82[CHB][hapmap]
rs11039105	0.82[CHB][hapmap]
rs11039112	0.82[CHB][hapmap]
rs11039119	0.82[CHB][hapmap]
rs11600292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11600668	0.82[CHB][hapmap]
rs11601798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11602250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11603373	0.82[ASN][1000 genomes]
rs11608083	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12417519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12796744	0.82[CHB][hapmap]
rs17790204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1872896	0.82[CHB][hapmap]
rs2087215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2279438	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2279439	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs34340483	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3922684	0.85[ASN][1000 genomes]
rs4269876	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4315028	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4394802	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4494268	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4498951	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4548577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4576779	0.85[ASN][1000 genomes]
rs4581406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4587689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4752815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752951	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752957	0.82[CHB][hapmap]
rs4752965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4752969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs61896133	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61896136	0.85[ASN][1000 genomes]
rs6485715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6485726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485739	0.82[CHB][hapmap]
rs7103581	0.82[CHB][hapmap]
rs7108822	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108902	0.82[CHB][hapmap]
rs7111270	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7114683	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7121418	0.82[CHB][hapmap]
rs7123632	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7125807	0.82[CHB][hapmap]
rs7126005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127741	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128193	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7130947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs747650	0.82[CHB][hapmap]
rs7929688	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931260	0.82[CHB][hapmap]
rs7935346	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7937410	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7938169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939786	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7940240	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7940441	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7945315	0.82[CHB][hapmap]
rs7945558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946709	0.82[CHB][hapmap]
rs7946739	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7950753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7951979	0.81[ASN][1000 genomes]
rs901747	0.81[ASN][1000 genomes]
rs923324	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46980600-47014000	Weak transcription	Aorta	Aorta
2	chr11:46980600-47021000	Weak transcription	Ovary	ovary
3	chr11:46980600-47026000	Weak transcription	HSMM	muscle
4	chr11:46981200-47023400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:46983000-47024000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:46989200-47026000	Weak transcription	Dnd41	blood
7	chr11:46994000-47026000	Weak transcription	Colonic Mucosa	Colon
8	chr11:46994200-47021000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:46994400-47014800	Weak transcription	Esophagus	oesophagus
10	chr11:46996000-47025800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:46998800-47023200	Weak transcription	Fetal Brain Male	brain
12	chr11:46999000-47019400	Weak transcription	Fetal Stomach	stomach
13	chr11:46999600-47013000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:46999600-47023600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:47000000-47012800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:47000000-47024600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:47000200-47025200	Weak transcription	NH-A	brain
18	chr11:47000200-47026400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:47000400-47012000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:47000400-47012600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:47000400-47012800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:47000400-47023400	Weak transcription	Osteobl	bone
23	chr11:47000400-47024600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:47000400-47026600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:47000600-47012600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:47001000-47013000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:47002000-47012600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:47002000-47017600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:47002200-47012800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:47003400-47015600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:47003400-47021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:47003400-47032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:47003600-47013200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr11:47003600-47014800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:47003600-47015000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:47003600-47024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:47005400-47026200	Weak transcription	Fetal Intestine Large	intestine
38	chr11:47005800-47019600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:47005800-47024000	Weak transcription	K562	blood
40	chr11:47005800-47025800	Weak transcription	HSMMtube	muscle
41	chr11:47006000-47023600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:47006000-47026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:47006800-47023400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:47006800-47023600	Weak transcription	NHLF	lung
45	chr11:47006800-47026000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:47007000-47024000	Weak transcription	Small Intestine	intestine
47	chr11:47007200-47023800	Weak transcription	Fetal Intestine Small	intestine
48	chr11:47007200-47024000	Weak transcription	Fetal Thymus	thymus
49	chr11:47007400-47026000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:47007600-47013800	Weak transcription	Stomach Mucosa	stomach

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