Variant report

Variant	rs4529876
Chromosome Location	chr11:10118993-10118994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10118222..10120370-chr11:10313905..10316403,2	K562	blood:
2	chr11:10115225..10117024-chr11:10118634..10120787,3	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10458929	0.86[ASN][1000 genomes]
rs10500717	0.81[ASN][1000 genomes]
rs10743123	0.81[EUR][1000 genomes]
rs10743129	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10770077	0.80[EUR][1000 genomes]
rs10770092	0.83[ASN][1000 genomes]
rs10840330	0.81[EUR][1000 genomes]
rs10840333	0.82[EUR][1000 genomes]
rs10840334	0.81[EUR][1000 genomes]
rs10840344	0.81[EUR][1000 genomes]
rs10840347	0.81[ASN][1000 genomes]
rs10840348	0.81[ASN][1000 genomes]
rs10840352	0.81[ASN][1000 genomes]
rs10840359	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840361	0.85[ASN][1000 genomes]
rs10840362	0.87[ASN][1000 genomes]
rs10840370	0.93[ASN][1000 genomes]
rs11042593	0.85[EUR][1000 genomes]
rs11042595	0.88[EUR][1000 genomes]
rs11042601	0.90[EUR][1000 genomes]
rs11042604	0.86[ASN][1000 genomes]
rs11042605	0.86[ASN][1000 genomes]
rs11042606	0.87[ASN][1000 genomes]
rs11042609	0.92[EUR][1000 genomes]
rs11042610	0.86[ASN][1000 genomes]
rs11042613	0.83[ASN][1000 genomes]
rs11042615	0.92[EUR][1000 genomes]
rs11042618	0.91[EUR][1000 genomes]
rs11042623	0.92[EUR][1000 genomes]
rs11042624	0.96[ASN][1000 genomes]
rs11042627	0.85[EUR][1000 genomes]
rs11042630	0.89[ASN][1000 genomes]
rs11042632	0.90[EUR][1000 genomes]
rs11042634	0.89[ASN][1000 genomes]
rs11042635	0.87[ASN][1000 genomes]
rs11042639	0.89[ASN][1000 genomes]
rs11042641	0.89[EUR][1000 genomes]
rs11042645	0.82[ASN][1000 genomes]
rs11042647	0.83[ASN][1000 genomes]
rs11530489	0.90[ASN][1000 genomes]
rs11600251	0.89[EUR][1000 genomes]
rs11600489	0.88[EUR][1000 genomes]
rs11606561	0.89[EUR][1000 genomes]
rs11607682	0.92[EUR][1000 genomes]
rs11607703	0.92[EUR][1000 genomes]
rs12290996	0.81[EUR][1000 genomes]
rs12360783	0.85[EUR][1000 genomes]
rs12362938	0.89[EUR][1000 genomes]
rs12364676	0.85[EUR][1000 genomes]
rs12417184	0.90[EUR][1000 genomes]
rs12418212	0.92[EUR][1000 genomes]
rs12418619	0.92[EUR][1000 genomes]
rs12420734	0.91[EUR][1000 genomes]
rs12421096	0.91[EUR][1000 genomes]
rs12421179	0.91[EUR][1000 genomes]
rs12421931	0.91[EUR][1000 genomes]
rs12575719	0.93[ASN][1000 genomes]
rs1372807	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1442732	0.86[ASN][1000 genomes]
rs1442737	0.85[EUR][1000 genomes]
rs17359113	0.85[EUR][1000 genomes]
rs2403226	0.81[EUR][1000 genomes]
rs2403227	0.83[EUR][1000 genomes]
rs2403229	0.83[EUR][1000 genomes]
rs2403292	0.81[EUR][1000 genomes]
rs28731164	0.92[EUR][1000 genomes]
rs34683105	0.81[EUR][1000 genomes]
rs4281477	0.81[EUR][1000 genomes]
rs4478985	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576815	0.83[EUR][1000 genomes]
rs4909917	0.82[EUR][1000 genomes]
rs4910086	0.83[EUR][1000 genomes]
rs4910095	0.81[EUR][1000 genomes]
rs56853694	0.85[EUR][1000 genomes]
rs59757006	0.84[ASN][1000 genomes]
rs61877048	0.87[EUR][1000 genomes]
rs61877049	0.87[EUR][1000 genomes]
rs61878582	0.91[EUR][1000 genomes]
rs61878587	0.91[EUR][1000 genomes]
rs61878622	0.92[EUR][1000 genomes]
rs61878636	0.91[EUR][1000 genomes]
rs7114044	0.81[EUR][1000 genomes]
rs7114303	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7121617	0.95[ASN][1000 genomes]
rs7123453	0.87[EUR][1000 genomes]
rs7123820	0.88[EUR][1000 genomes]
rs7924875	0.81[EUR][1000 genomes]
rs7928959	0.87[EUR][1000 genomes]
rs7935934	0.81[EUR][1000 genomes]
rs7938491	0.87[EUR][1000 genomes]
rs7938502	0.85[EUR][1000 genomes]
rs7938647	0.88[EUR][1000 genomes]
rs7938788	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945980	0.81[EUR][1000 genomes]
rs7946995	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7947306	0.89[EUR][1000 genomes]
rs7950447	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10110400-10122200	Weak transcription	HSMM	muscle
4	chr11:10112000-10119200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10112400-10122000	Weak transcription	NHLF	lung
6	chr11:10113200-10119200	Weak transcription	Fetal Brain Male	brain
7	chr11:10113400-10119400	Weak transcription	Fetal Lung	lung
8	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:10114800-10120000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:10116800-10125400	Weak transcription	Ovary	ovary
11	chr11:10116800-10131000	Weak transcription	Gastric	stomach
12	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10117400-10119400	Weak transcription	Aorta	Aorta
14	chr11:10117600-10120600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10118200-10121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:10118400-10119000	Enhancers	HUVEC	blood vessel
19	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10118600-10119400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:10118600-10119800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:10118600-10120000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr11:10118800-10121800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea

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